@febos41 profile picture
Eugene F. Baulin @febos41
Joined October 2010
  • Posts 179
  • Following 247
  • Followers 154
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Eugene F. Baulin @febos41
Jul 3
We’ve just released a new SQUARNA preprint: doi.org/10.64898/2026.06.30.… Alongside it, we are launching the LaRNAl Platform: larnal.imol.institute/ #RNA #SQUARNA #LaRNAl #LaRNAlP #2D #Structure #Prediction #Bioinformatics #StructuralBiology #ComputationalBiology #Algorithms
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The LaRNAl Platform currently provides a web interface for SQUARNA, enabling analysis of individual RNA sequences with beautiful 2D visualizations powered by RFviewJS (github.com/dincarnato/RFview…) by @incaRNAtolab and RNAcanvas (github.com/pzhaojohnson/rnac…).
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More tools from the lab will be integrated into the platform soon, including R3FOLD, our upcoming RNA 3D structure prediction method, expected in late 2026. Feedback and discussion are very welcome, and stay tuned for more!
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Many thanks to @MaxSerdakov (@IMol_Institute), Grigory Nikolaev, Davyd Bohdan, and Janusz Bujnicki (@IIMCB_Poland), and of course @EMBO and @NCN_PL!
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It also integrates structural restraints and chemical probing data and can identify Rfam templates, G-quadruplex patterns, and even protein-binding motifs!
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The method features multiple algorithmic variants, including the Nussinov algorithm, which shows strong performance with our scoring scheme, and the Edmonds algorithm, a polynomial-time method for pseudoknot prediction (yes - it’s not NP-hard under base pair maximization!).
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We’ve just released a new SQUARNA preprint: doi.org/10.64898/2026.06.30.… Alongside it, we are launching the LaRNAl Platform: larnal.imol.institute/ #RNA #SQUARNA #LaRNAl #LaRNAlP #2D #Structure #Prediction #Bioinformatics #StructuralBiology #ComputationalBiology #Algorithms
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SQUARNA is an RNA 2D structure prediction method based on a variant of the base pair maximization framework. It supports both single-sequence and alignment-based prediction and can handle pseudoknotted structures as well as alternative conformations.
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Feeling grateful and motivated for the work ahead!
IMol @IMol_Institute
Jun 26
Congratulations to Prof. Eugene Baulin on receiving the prestigious @MNiSW_GOV__PL Scholarship for Outstanding Young Scientists! At @IMol_Institute we wish you continued success and many more groundbreaking discoveries!
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This Saturday, @MaxSerdakov and I represented @IMol_Institute at the 29th Scientific Picnic in Warsaw. We ran an RNA folding station: participants used paper sequences and paper clips to build RNA structures. Conclusion: triple pseudoknots are not easy 😄 #PiknikNaukowy
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1000% love it!
Danny IncaRNAto @incaRNAtolab
Jun 11
Today I am so incredibly excited to share with you a new tool from the lab, #RFviewJS (and its stand-alone version #RFview). Two tools I built to fill a gap that has frustrated me for years. #RNA secondary structure visualization (1/n)
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Eugene F. Baulin reposted
IMol @IMol_Institute
Jun 9
@IMol_Institute is taking part in this year’s edition of the Scientific Picnic - Europe’s largest popular science event! Date: Saturday, June 13 Time: 11:00 AM – 8:00 PM National Stadium, Family Zone - stand B19 (right next to Gate 11). Don't miss your stop at @IMol_Institute
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Eugene F. Baulin reposted
Pedro Madrigal @compBiology
Jun 4
We're hiring! Bioinformatics Data engineer Join the @emblebi RNA Resources team and help shape the future of open RNA data for the global life sciences community embl.wd103.myworkdayjobs.com…
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Eugene F. Baulin reposted
IMol @IMol_Institute
May 19
Congratulations to Dr. Eugene Baulin on the successful Nucleic Acids Research publication introducing ARTEM Server for comparative nucleic acid 3D structure analysis. Explore the publication here: doi.org/10.1093/nar/gkag428 #StructuralBiology #RNAResearch #ComputationalBiology
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Happy to share our new publication in Nucleic Acids Research: ARTEM server: an online tool for nucleic acid 3D motif searches, 3D structure superposition and structure-based alignment doi.org/10.1093/nar/gkag428 Check it out: artemserver.genesilico.pl
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Thanks to @IIMCB_Poland @IMol_Institute @NCN_PL
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Eugene F. Baulin reposted
3procentnanaukę.pl
 @3procentnanauke
May 6
!!! UWAGA - ZACZYNAMY - 3procentnanauke.pl!!! 🔬🇵🇱 3% dla nauki, 100% dla Polski 🇵🇱🔬 Zapraszamy do wsparcia, udziału i nagłośnienia naszej akcji! Domagamy się zwiększenia finansowania polskiej nauki do 3% PKB — bo bez nauki nie ma rozwoju. Nasze postulaty: 1️⃣ Pracownicy sektora nauki muszą mieć za co żyć 2️⃣ Stabilne i godne warunki dla studentów i doktorantów 3️⃣ Badacze muszą mieć za co prowadzić badania 📺 Więcej o postulatach: youtu.be/JMVyvK-5htA 📣 Działamy już w maju: 📝 PETYCJA Pokażmy jak wielu osobom, zależy na zwiększeniu finansowania nauki! Podpisz i udostępnij: 👉 petycjeonline.com/3_procent_… 🎥 #3procentNaNaukę Twórzcie posty i rolki pokazujące, dlaczego Wasze badania mają znaczenie. Budujmy razem silny, pozytywny obraz polskiej nauki! ✊ PROTEST 📅 27 maja, godz. 13:00 📍 Warszawa, pod Sejmem (pomnik AK) 👩‍🔬👨‍🔬 Przyjdźcie w fartuchach, z transparentami i energią! #3procentNaNaukę #ProtestSektoraNauki
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Eugene F. Baulin reposted
IMol @IMol_Institute
Apr 16
@IMol Science Club with guest speaker, Prof. Jan Gorodkin, University of Copenhagen 📅 Date: April 23rd, 2 pm 📍 Place: IMol PAS, Flisa 6, Warsaw 🎓 Host: Dr. Eugene F. Baulin 🧬 Title: Computational Strategies for High-Precision RNA-Guided Therapeutics Join us!
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Eugene F. Baulin reposted
Karen Sarkisyan @k_sarkisyan
Mar 3
Two positions available in my lab in London to work on engineering plant traits: 🪴Postdoc and PhD student positions 🪴 Deadline very soon: 10 March 2026. Links in the comments. Please share with suitable candidates!
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SONATA BIS from the @NCN_PL ($1.2M) to launch a new RNA design lab to build AI models grounded in experimental data at the Centrum Nowych Technologii @UniWarszawski. Hiring: Experimental Postdoc (SELEX) & Bioinformatics / AI (postdoc and PhD) mmagnus@fas.harvard.edu #rna
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Meet SQUARNA 3.0, our tool for #RNA secondary structure prediction: pypi.org/project/SQUARNA/ Now with options for @RfamDB template search and G-quadruplex pattern recognition! Currently, as CLI and Python API, and soon, a web version. #Rfam #G4 #Gquadruplex #Bioinformatics
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