Head of Strategy at Manifold Bio

Joined July 2007
Photos and videos
Shane Lofgren reposted
Really great collaboration between @ManifoldBio and @nvidia to test 1M de novo designed binders against 127 targets, measuring over 100 million potential protein-protein interactions! This was a great collaboration with some very exciting results. NVIDIA's new Proteina-Complexa method is SOTA for de novo minibinder design. If you're interested in designing minibinders to targets you couldn't hit with other methods, try it out! I'm particularly excited about what this large scale data enables. As we generate 1000s of experimentally validated structures, this data becomes the input to training new protein design models. At Manifold, we are generating datasets of this size continuously, and have experimentally validated thousands of de novo designed binders across many formats (VHH, minibinders, peptides, etc). New models will open up new hard to hit targets, paired with our large scale in vivo measurement, will enable us to create previously impossible therapeutics. Up next is training new models on this and other data we have generated, stay tuned! And thanks to NVIDIA for setting up such a great collaboration, its been fun and fruitful!
🧵 We ran the largest head-to-head benchmark of protein binder design methods in the wet lab. Project page: research.nvidia.com/labs/gen… 1 million designs. 127 targets. RFdiffusion, BindCraft, BoltzGen, and Proteina-Complexa — all tested side by side.👇
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Shane Lofgren reposted
What you’re seeing at @ManifoldBio is what happens when two exponentials begin to resonate–the evolution of AI and the evolution of massively parallel molecular measurement and design. When we started Manifold Bio with @PierceOgdenJ , @geochurch , and @slofgren, we set out to do something bold: to build an AI-first biopharma company that could map the astronomic space of molecular design against the complexity of human biology. We had already become world leaders in the secret art of combining Machine Learning and Multiplexed Libraries, or ML². We believed this approach could be transformative to drug discovery. AI in drug discovery has always faced one fundamental barrier: the translational gap between what works in a petri dish and what will work in a patient. We believed that closing that gap required a way to power AI models with massive-scale experimental feedback directly from living organisms. Such a platform would be positioned to solve grand challenges in human health, including creating medicines that could cross the blood-brain barrier. To succeed in such a challenge, it not only takes a culture of scientific boldness, but also bold partners. The boldness of the Roche team was clear from the moment we started mapping out this collaboration, both in their rigor in evaluation of the Manifold platform and the ambition we both shared in how to best leverage our approach. This is the company that has literally integrated the Genentech DNA, and charted many firsts along the way, including some of the most compelling brain-shuttling clinical data to date. It’s a privilege to combine forces to advance the frontier of brain delivery together. This deal is fantastic validation of the power of our approach. And we’re just getting started.
The hardest problems in medicine will not be solved by incremental innovation. They will require a fundamentally new approach that grounds AI-driven design in large-scale data from living systems. Excited to announce our partnership with @Roche manifold.bio/news/manifold-b…
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It's been amazing to see the progress in generative AI mAb design, by both our team and others (Chai, Germinal, etc)
Excited to announce mBER, our fully open AI tool for de novo design of epitope-specific antibodies. To validate, we ran the largest de novo antibody experiment to date: >1M designs tested against 145 targets, measuring >100M interactions. We found specific binders for nearly half the targets, with up to 40% hit rates. Thread below:
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Shane Lofgren reposted
We're stil writing the @ManifoldBio story, but @ElliotHershberg just dropped a fantastic piece capturing the journey so far on his blog Century of Biology.
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Really proud of the work that went into winning the Harvard President's Innovation Challenge. Excited to keep building!
@manifoldbio wins the Life Lab track of the 2021 Harvard President's Innovation Challenge! We were born in the @geochurch lab and have been enabled by the @innovationlab community and staff since the start. So much progress in just one year at @harvardlifelab and more to come!
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Shane Lofgren reposted
.@manifoldbio won the grand prize in this year's @Harvard President's Innovation Challenge. The transformative company builds technology that exponentially increases measurement throughput at all stages of drug development. bit.ly/3tqa8DZ
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Great podcast from our CSO @PierceOgdenJ on the design of synthetic proteins!
On Translation #3, we talk with @PierceOgdenJ, lead author on the paper that forms the basis of @Dyno_Tx! We talk AAV design, the need for synthetic proteins, & more! And hint at what's to come w/ his newco @manifoldbio. With special guest hosts @dbgoodman & @vram142! Links 👇
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We're looking for creative bioengineers (Scientists and RAs) to join us in building @ManifoldBio Here's why we're building Manifold: manifold.bio/blog/introducin… If this resonates with you or someone you know, please reach out directly or email careers@manifold.bio
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Extremely excited to get to work bringing multiplexing to all stages of the biologics development pipeline.
Excited to share our seed raise @ManifoldBio to build multiplexed tech for protein therapeutics dev with @PierceOgdenJ, @slofgren, @geochurch and a talented team! Huge support from @Playground_VC and @fiftyyears. Thanks @FierceBiotech for the nice piece! fiercebiotech.com/biotech/co…
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Hey @slrobinet, @MikeNGladstone any idea where to get the minutes / recording of the FDA Advisory Committee discussion today?
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Great inside look at how seed stage VCs think about company formation from academic inventions. They do much of company formation leg-work. x.com/LifeSciVC/status/79895…
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From GWAS hits in autoimmune disease to actionable knowledge: disease selection, dosing, likelihood of favorable benefit/risk ratio? x.com/LifeSciVC/status/79394…
Further elucidation of role of Tyk2 in autoimmunity. Selective Tyk2 inhibition could unlock a number of diseases. #NimbusTx @DonWNicholson x.com/Festivus159/status/793…
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New HTS approach recreates tumor microenv in well -> small mols that have specific efficacy for cancer stem cells jci.org/articles/view/86489
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Treatment in sepsis. No significant difference, but p = .053... I think in sepsis this might have to count as a win. @TimSweeney83 thoughts? x.com/NEJM/status/7913902685…
Original Article: Levosimendan for the Prevention of Acute Organ Dysfunction in #Sepsis nej.md/2dzhpi2
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anti-PD1 IL2 Cancer Vax anti-neoantigen mAB... what a combo! Dramatic survival benefit in mel, breast, HPV cancers. Xenograft tho :/ x.com/NatureMedicine/status/…
Combination #immunotherapy mobilizes innate adaptive immunity, eradicates large established tumors in mouse models: go.nature.com/2e6UxU4
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Just enrolled in app based study to track photos of moles to improve melanoma diagnosis. Studies like this could be big, if done right... x.com/AIMatMelanoma/status/7…
Android version of Mole Mapper to help people track and monitor moles, has been released The app is available on Google Play.
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Review on immunogenic cell death, nat revs imm. New concept in cancer treatment aiming to create synergy with immune oncology treatments. x.com/mmw_lmw/status/7895941…
Immunogenic #CellDeath | Responding to dying cells during Infection & Cancer | Galluzzi & Kroemer @NatRevImmunol ow.ly/Dat0305qbN9
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2009 news article bashing Medarex, company whose platform went on to yield 8 marketed mAB drugs. Seek to understand before you criticize. x.com/MikeNGladstone/status/…
And yet here's an example of what some in the media were saying 4 months before BMS acquisition: cbsnews.com/news/medarex-exe… x.com/andybiotech/status/789…
Congrats to @PerlaraPBC on Novartis deal! Def check out their blog: perlara.com/blog great coverage of nitty gritty research process x.com/FierceBiotech/status/7…
Novartis invests, partners with Y Combinator grad in lysosomal storage disorders: ow.ly/PLMb305macq $NVS @StacyALawrence
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